Plot of new markers

This visualization function can be launched from class DigitalCellSorter at the stage of post-processing.

From submodule VisualizationFunctions:

class VisualizationFunctions(dataName='dataName', saveDir='', matplotlibMode='Agg', safePlotting=True, verbose=1)[source]

Class of visualization functions for DigitalCellSorter

makePlotOfNewMarkers(*args, **kwargs)[source]

Produce plot of the new markers extracted from the annotated clusters

Parameters:
df_marker_cell_type: pandas.DataFrame

Known markers per cell types

df_new_marker_cell_type: pandas.DataFrame

New markers per cell types

dpi: int, Default 600

Resolution of the figure image

extension: str, Default ‘png’

Format of the figure file

Returns:

None

Usage:

DCS = DigitalCellSorter.DigitalCellSorter()

DCS.makePlotOfNewMarkers(df_marker_cell_type, df_new_marker_cell_type)

Example output:

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