Stacked bar plot

This visualization function can be launched from class DigitalCellSorter at the stage of post-processing.

From submodule VisualizationFunctions:

class VisualizationFunctions(dataName='dataName', saveDir='', matplotlibMode='Agg', safePlotting=True, verbose=1)

Class of visualization functions for DigitalCellSorter

makeStackedBarplot(*args, **kwargs)

Produce stacked barplot with cell fractions

Parameters:

clusterName: str, Deafult None

Label to include at the bar bottom. If None the self.dataName value will be used

legendStyle: boolean, Default False

Use one out of two styles of this figure

includeLowQC: boolean, Default True

Wether to include low quality cells

dpi: int, Default 600

Resolution of the figure image

extension: str, Default ‘png’

Format of the figure file

Returns:

None

Usage:

DCS = DigitalCellSorter.DigitalCellSorter()

DCS.makeStackedBarplot(clusterName)

Example output: